species:   Rhirr
pid:       PID1178
parent:    Locus_342
paralog:   
locus:     scaffold_28:350996-351184
matures:   ['UAAACACUGCUGUCCUAGUGG', 'CACCGGGAUUGAAGUGUUUAUC']
srr:       ERR2841789
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhirr.Rhiir2_1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Silvestri2019-js.ERR2841789.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Silvestri2019-js.ERR2841789.cram scaffold_28:350996-351184

0 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

             *************                                                   *************                                                                                                   
ACAUACGAUAAACACUGCUGUCCUAGUGGUAACGACGUAAAUUAUUAAGAUCUACAGGUCGCUGGUUCAAUUAUACACCGGGAUUGAAGUGUUUAUCCUUUUCUUAAGUGGAACUAUCCUUACGACGUAGUCAGCUUAAAUCUUAUUUUUCUCUGAUUGGAAUGUUGACUUUCCAUAAUUGUGAGUUUA
......((((((((((...(((((.((((((((((((((.(((.....))).)))..)))).........)))).))).)))))...))))))))))...((((.....)))).....(((((((...(((((((...((((............)))).....)))))))........)))))))....
--------UAAACACUGCUGUCCUAGUGG---------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------CACCGGGAUUGAAGUGUUUAUC-------------------------------------------------------------------------------------------- l=22 a=0 c*
---------------UGCUGUCCUAG------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=11 a=1 ma
-------------------------------------------------------------------------------GGGAUUGAAGU--------------------------------------------------------------------------------------------------- l=11 a=0 ma*

---------------UGCUGUCCUAG------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=11 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100010011100
fn-001
